PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04616.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 168aa    MW: 19242 Da    PI: 8.4435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04616.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.71.9e-3961393128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknratksgy 82 
                              +G+rF+Pt ee++++yLk+k+ +++  ++e+i+e++i+ ++P +Lp  +k+k+++  wyfF++r+  ++    ++k ++r+t sg+
  Rsa1.0_04616.1_g00002.1   6 VGYRFSPTGEEVINYYLKNKILDEPWLVNEAINEINICAYDPVSLPslSKLKSKDLVWYFFCRRECYASnatdKKKGTKRTTPSGF 91 
                              7************************999899***************5448888888*******98765533334567788999*** PP

                      NAM  83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              Wkatgkd+++++k  +g ++g+kktLv+++g+a +g+ t Wv+hey++
  Rsa1.0_04616.1_g00002.1  92 WKATGKDRRIKEKrgHGVEIGIKKTLVYHHGKAANGVWTPWVIHEYHI 139
                              ************9777788***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.9354168IPR003441NAC domain
SuperFamilySSF1019419.68E-424144IPR003441NAC domain
PfamPF023658.2E-246139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MENNLVGYRF SPTGEEVINY YLKNKILDEP WLVNEAINEI NICAYDPVSL PSLSKLKSKD  60
LVWYFFCRRE CYASNATDKK KGTKRTTPSG FWKATGKDRR IKEKRGHGVE IGIKKTLVYH  120
HGKAANGVWT PWVIHEYHIT SLPPAQFLDL LDVDMGFDSS VSDLVDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-20713918140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204391e-139KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111357.15e-84PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1262e-66NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4F5H16e-84M4F5H1_BRARP; Uncharacterized protein
STRINGBra036327.1-P2e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.14e-56NAC domain containing protein 69